Detailed information of SNP:
|
SNP ID:
sf1117024963(Gbrowse)
Chromosome: chr11 Position: 17024963 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 58.87% | 41.13% |
| All Indica | 791 | 35.27% | 64.73% |
| All Japonica | 497 | 90.14% | 9.86% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 33.16% | 66.84% |
| Indica II | 210 | 44.29% | 55.71% |
| Indica Intermediate | 207 | 29.95% | 70.05% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117024963 | T->C | INTERGENIC | None |