Detailed information of SNP:
|
SNP ID:
sf1117042359(Gbrowse)
Chromosome: chr11 Position: 17042359 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 66.41% | 33.59% |
| All Indica | 785 | 42.04% | 57.96% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 371 | 38.54% | 61.46% |
| Indica II | 207 | 44.44% | 55.56% |
| Indica Intermediate | 207 | 45.89% | 54.11% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117042359 | A->T | INTERGENIC | None |