Detailed information of SNP:



SNP ID: sf1117065840(Gbrowse)

Chromosome: chr11

Position: 17065840
Major allele: A

Minor allele: C

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1417 93.01% 6.99%
All Indica799 99.87% 0.13%
All Japonica495 80.61% 19.39%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica333 71.77% 28.23%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1117065840 A->C INTERGENIC None