Detailed information of SNP:
|
SNP ID:
sf1117068621(Gbrowse)
Chromosome: chr11 Position: 17068621 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 97.45% | 2.55% |
| All Indica | 793 | 96.09% | 3.91% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 96.76% | 3.24% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117068621 | G->A | LOC_Os11g30159(LOC_Os11g30159.1) | INTRON |