Detailed information of SNP:
|
SNP ID:
sf1117081965(Gbrowse)
Chromosome: chr11 Position: 17081965 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 77.48% | 22.52% |
| All Indica | 786 | 71.37% | 28.63% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 370 | 78.92% | 21.08% |
| Indica II | 210 | 58.10% | 41.90% |
| Indica Intermediate | 206 | 71.36% | 28.64% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117081965 | G->A | INTERGENIC | None |