Detailed information of SNP:
|
SNP ID:
sf1117082000(Gbrowse)
Chromosome: chr11 Position: 17082000 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 70.78% | 29.22% |
| All Indica | 786 | 72.14% | 27.86% |
| All Japonica | 497 | 79.28% | 20.72% |
| Aus | 65 | 7.69% | 92.31% |
| Indica I | 371 | 79.51% | 20.49% |
| Indica II | 210 | 59.05% | 40.95% |
| Indica Intermediate | 205 | 72.20% | 27.80% |
| Temperate Japonica | 335 | 70.75% | 29.25% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117082000 | T->A | INTERGENIC | None |