Detailed information of SNP:
|
SNP ID:
sf1117087144(Gbrowse)
Chromosome: chr11 Position: 17087144 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 71.06% | 28.94% |
| All Indica | 793 | 73.01% | 26.99% |
| All Japonica | 496 | 78.83% | 21.17% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 373 | 79.36% | 20.64% |
| Indica II | 212 | 61.32% | 38.68% |
| Indica Intermediate | 208 | 73.56% | 26.44% |
| Temperate Japonica | 335 | 69.85% | 30.15% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117087144 | A->G | INTERGENIC | None |