Detailed information of SNP:
|
SNP ID:
sf1117099822(Gbrowse)
Chromosome: chr11 Position: 17099822 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 80.68% | 19.32% |
| All Indica | 792 | 81.82% | 18.18% |
| All Japonica | 488 | 75.41% | 24.59% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 89.01% | 10.99% |
| Indica II | 212 | 84.91% | 15.09% |
| Indica Intermediate | 207 | 65.70% | 34.30% |
| Temperate Japonica | 331 | 71.90% | 28.10% |
| Tropical Japonica | 90 | 78.89% | 21.11% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117099822 | C->T | INTERGENIC | None |