Detailed information of SNP:
|
SNP ID:
sf1117101564(Gbrowse)
Chromosome: chr11 Position: 17101564 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 56.07% | 43.93% |
| All Indica | 796 | 31.03% | 68.97% |
| All Japonica | 497 | 90.14% | 9.86% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 30.75% | 69.25% |
| Indica II | 212 | 35.38% | 64.62% |
| Indica Intermediate | 210 | 27.14% | 72.86% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117101564 | A->G | INTERGENIC | None |