Detailed information of SNP:
|
SNP ID:
sf1117103271(Gbrowse)
Chromosome: chr11 Position: 17103271 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 65.03% | 34.97% |
| All Indica | 768 | 43.88% | 56.12% |
| All Japonica | 494 | 92.91% | 7.09% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 357 | 39.22% | 60.78% |
| Indica II | 207 | 56.04% | 43.96% |
| Indica Intermediate | 204 | 39.71% | 60.29% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 70.65% | 29.35% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117103271 | C->T | INTERGENIC | None |