Detailed information of SNP:
|
SNP ID:
sf1117107445(Gbrowse)
Chromosome: chr11 Position: 17107445 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 97.23% | 2.77% |
| All Indica | 792 | 97.47% | 2.53% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 205 | 95.12% | 4.88% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117107445 | G->A | INTERGENIC | None |