Detailed information of SNP:
|
SNP ID:
sf1117114338(Gbrowse)
Chromosome: chr11 Position: 17114338 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 59.32% | 40.68% |
| All Indica | 791 | 33.12% | 66.88% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 31.73% | 68.27% |
| Indica II | 211 | 35.55% | 64.45% |
| Indica Intermediate | 205 | 33.17% | 66.83% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117114338 | G->A | LOC_Os11g30240(LOC_Os11g30240.1) | INTRON |