Detailed information of SNP:



SNP ID: sf1117117816(Gbrowse)

Chromosome: chr11

Position: 17117816
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1418 54.87% 45.13%
All Indica798 78.82% 21.18%
All Japonica497 10.46% 89.54%
Aus67 94.03% 5.97%
Indica I374 72.73% 27.27%
Indica II213 84.04% 15.96%
Indica Intermediate211 84.36% 15.64%
Temperate Japonica335 1.49% 98.51%
Tropical Japonica94 39.36% 60.64%
Japonica Intermediate68 14.71% 85.29%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 50.00% 50.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1117117816 C->T INTERGENIC None