Detailed information of SNP:
|
SNP ID:
sf1117117816(Gbrowse)
Chromosome: chr11 Position: 17117816 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.87% | 45.13% |
| All Indica | 798 | 78.82% | 21.18% |
| All Japonica | 497 | 10.46% | 89.54% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 72.73% | 27.27% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117117816 | C->T | INTERGENIC | None |