Detailed information of SNP:
|
SNP ID:
sf1117118750(Gbrowse)
Chromosome: chr11 Position: 17118750 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1316 | 58.97% | 41.03% |
| All Indica | 755 | 38.15% | 61.85% |
| All Japonica | 496 | 90.12% | 9.88% |
| Aus | 18 | 33.33% | 66.67% |
| Indica I | 369 | 46.61% | 53.39% |
| Indica II | 184 | 33.15% | 66.85% |
| Indica Intermediate | 202 | 27.23% | 72.77% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 10 | 30.00% | 70.00% |
| Intermediate | 37 | 86.49% | 13.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117118750 | A->G | INTERGENIC | None |