Detailed information of SNP:
|
SNP ID:
sf1117119495(Gbrowse)
Chromosome: chr11 Position: 17119495 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 52.82% | 47.18% |
| All Indica | 798 | 75.69% | 24.31% |
| All Japonica | 497 | 10.46% | 89.54% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 70.67% | 29.33% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117119495 | G->A | INTERGENIC | None |