Detailed information of SNP:
|
SNP ID:
sf1117126929(Gbrowse)
Chromosome: chr11 Position: 17126929 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 65.83% | 34.17% |
| All Indica | 782 | 87.60% | 12.40% |
| All Japonica | 494 | 27.33% | 72.67% |
| Aus | 63 | 90.48% | 9.52% |
| Indica I | 368 | 84.24% | 15.76% |
| Indica II | 206 | 92.72% | 7.28% |
| Indica Intermediate | 208 | 88.46% | 11.54% |
| Temperate Japonica | 335 | 30.75% | 69.25% |
| Tropical Japonica | 91 | 24.18% | 75.82% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117126929 | A->T | INTERGENIC | None |