Detailed information of SNP:
|
SNP ID:
sf1117131518(Gbrowse)
Chromosome: chr11 Position: 17131518 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 91.06% | 8.94% |
| All Indica | 792 | 88.01% | 11.99% |
| All Japonica | 495 | 95.76% | 4.24% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 204 | 93.63% | 6.37% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117131518 | T->C | INTERGENIC | None |