Detailed information of SNP:
|
SNP ID:
sf1117142612(Gbrowse)
Chromosome: chr11 Position: 17142612 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 62.61% | 37.39% |
| All Indica | 796 | 91.33% | 8.67% |
| All Japonica | 497 | 10.66% | 89.34% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 373 | 88.47% | 11.53% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117142612 | C->T | INTERGENIC | None |