Detailed information of SNP:
|
SNP ID:
sf1117153344(Gbrowse)
Chromosome: chr11 Position: 17153344 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 82.86% | 17.14% |
| All Indica | 784 | 77.93% | 22.07% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 59 | 18.64% | 81.36% |
| Indica I | 371 | 89.22% | 10.78% |
| Indica II | 204 | 69.61% | 30.39% |
| Indica Intermediate | 209 | 66.03% | 33.97% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117153344 | C->T | INTERGENIC | None |