Detailed information of SNP:
|
SNP ID:
sf1117155688(Gbrowse)
Chromosome: chr11 Position: 17155688 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 79.73% | 20.27% |
| All Indica | 797 | 66.25% | 33.75% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 70.51% | 29.49% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 211 | 54.98% | 45.02% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117155688 | C->T | INTERGENIC | None |