Detailed information of SNP:
|
SNP ID:
sf1117162304(Gbrowse)
Chromosome: chr11 Position: 17162304 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 61.40% | 38.60% |
| All Indica | 797 | 37.89% | 62.11% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 40.37% | 59.63% |
| Indica II | 213 | 35.68% | 64.32% |
| Indica Intermediate | 210 | 35.71% | 64.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117162304 | G->A | INTERGENIC | None |