Detailed information of SNP:
|
SNP ID:
sf1117162681(Gbrowse)
Chromosome: chr11 Position: 17162681 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1309 | 93.74% | 6.26% |
| All Indica | 795 | 92.20% | 7.80% |
| All Japonica | 395 | 96.96% | 3.04% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 209 | 86.60% | 13.40% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 240 | 98.75% | 1.25% |
| Tropical Japonica | 87 | 91.95% | 8.05% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117162681 | A->C | INTERGENIC | None |