Detailed information of SNP:
|
SNP ID:
sf1117173648(Gbrowse)
Chromosome: chr11 Position: 17173648 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 65.98% | 34.02% |
| All Indica | 799 | 86.86% | 13.14% |
| All Japonica | 496 | 27.02% | 72.98% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 80.00% | 20.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 31.34% | 68.66% |
| Tropical Japonica | 93 | 26.88% | 73.12% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117173648 | G->A | LOC_Os11g30370(LOC_Os11g30370.1) | INTRON |