Detailed information of SNP:
|
SNP ID:
sf1117181582(Gbrowse)
Chromosome: chr11 Position: 17181582 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 62.43% | 37.57% |
| All Indica | 798 | 43.11% | 56.89% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 15.15% | 84.85% |
| Indica I | 375 | 32.80% | 67.20% |
| Indica II | 212 | 47.17% | 52.83% |
| Indica Intermediate | 211 | 57.35% | 42.65% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117181582 | A->G | INTERGENIC | None |