Detailed information of SNP:
|
SNP ID:
sf1117182900(Gbrowse)
Chromosome: chr11 Position: 17182900 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 58.17% | 41.83% |
| All Indica | 794 | 39.29% | 60.71% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 31.73% | 68.27% |
| Indica II | 212 | 44.34% | 55.66% |
| Indica Intermediate | 207 | 47.83% | 52.17% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117182900 | C->T | INTERGENIC | None |