Detailed information of SNP:
|
SNP ID:
sf1117198683(Gbrowse)
Chromosome: chr11 Position: 17198683 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 68.85% | 31.15% |
| All Indica | 781 | 55.95% | 44.05% |
| All Japonica | 495 | 94.95% | 5.05% |
| Aus | 58 | 13.79% | 86.21% |
| Indica I | 370 | 52.16% | 47.84% |
| Indica II | 202 | 53.47% | 46.53% |
| Indica Intermediate | 209 | 65.07% | 34.93% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 76.34% | 23.66% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117198683 | C->T | LOC_Os11g30390(LOC_Os11g30390.1) | Non-Synonymous SNP |