Detailed information of SNP:
|
SNP ID:
sf1117227329(Gbrowse)
Chromosome: chr11 Position: 17227329 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 82.88% | 17.12% |
| All Indica | 799 | 81.98% | 18.02% |
| All Japonica | 497 | 85.71% | 14.29% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 55.40% | 44.60% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117227329 | G->A | INTERGENIC | None |