Detailed information of SNP:



SNP ID: sf1117227329(Gbrowse)

Chromosome: chr11

Position: 17227329
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 82.88% 17.12%
All Indica799 81.98% 18.02%
All Japonica497 85.71% 14.29%
Aus67 79.10% 20.90%
Indica I375 96.27% 3.73%
Indica II213 55.40% 44.60%
Indica Intermediate211 83.41% 16.59%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 32.98% 67.02%
Japonica Intermediate68 89.71% 10.29%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 66.67% 33.33%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1117227329 G->A INTERGENIC None