Detailed information of SNP:
|
SNP ID:
sf1117250946(Gbrowse)
Chromosome: chr11 Position: 17250946 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 85.62% | 14.38% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 497 | 69.22% | 30.78% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 55.22% | 44.78% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117250946 | C->T | LOC_Os11g30470(LOC_Os11g30470.1) | INTRON |