Detailed information of SNP:
|
SNP ID:
sf1117251551(Gbrowse)
Chromosome: chr11 Position: 17251551 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 95.37% | 4.63% |
| All Indica | 790 | 96.84% | 3.16% |
| All Japonica | 493 | 92.29% | 7.71% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 209 | 97.61% | 2.39% |
| Indica Intermediate | 207 | 91.79% | 8.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 61.11% | 38.89% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117251551 | G->A | LOC_Os11g30470(LOC_Os11g30470.1) | Non-Synonymous SNP |