Detailed information of SNP:
|
SNP ID:
sf1117253223(Gbrowse)
Chromosome: chr11 Position: 17253223 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 87.99% | 12.01% |
| All Indica | 768 | 87.11% | 12.89% |
| All Japonica | 491 | 87.98% | 12.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 353 | 82.72% | 17.28% |
| Indica II | 208 | 95.19% | 4.81% |
| Indica Intermediate | 207 | 86.47% | 13.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 41.11% | 58.89% |
| Japonica Intermediate | 66 | 90.91% | 9.09% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117253223 | C->T | LOC_Os11g30470(LOC_Os11g30470.1) | Synonymous |