Detailed information of SNP:
|
SNP ID:
sf1117254462(Gbrowse)
Chromosome: chr11 Position: 17254462 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 59.84% | 40.16% |
| All Indica | 795 | 84.28% | 15.72% |
| All Japonica | 496 | 15.73% | 84.27% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 372 | 84.14% | 15.86% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 70.97% | 29.03% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117254462 | G->A | INTERGENIC | None |