Detailed information of SNP:
|
SNP ID:
sf1117254699(Gbrowse)
Chromosome: chr11 Position: 17254699 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1357 | 50.77% | 49.23% |
| All Indica | 747 | 70.41% | 29.59% |
| All Japonica | 497 | 15.49% | 84.51% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 343 | 65.60% | 34.40% |
| Indica II | 210 | 79.52% | 20.48% |
| Indica Intermediate | 194 | 69.07% | 30.93% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 5 | 40.00% | 60.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117254699 | A->G | INTERGENIC | None |