Detailed information of SNP:
|
SNP ID:
sf1117282724(Gbrowse)
Chromosome: chr11 Position: 17282724 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 84.76% | 15.24% |
| All Indica | 797 | 87.70% | 12.30% |
| All Japonica | 497 | 77.46% | 22.54% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 212 | 85.38% | 14.62% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 335 | 67.16% | 32.84% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117282724 | C->A | INTERGENIC | None |