Detailed information of SNP:
|
SNP ID:
sf1117319052(Gbrowse)
Chromosome: chr11 Position: 17319052 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 78.87% | 21.13% |
| All Indica | 799 | 75.59% | 24.41% |
| All Japonica | 495 | 85.05% | 14.95% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 375 | 86.13% | 13.87% |
| Indica II | 213 | 53.99% | 46.01% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 30.11% | 69.89% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117319052 | G->A | LOC_Os11g30560(LOC_Os11g30560.1) | UTR_5_PRIME |