Detailed information of SNP:
|
SNP ID:
sf1117322984(Gbrowse)
Chromosome: chr11 Position: 17322984 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 85.47% | 14.53% |
| All Indica | 799 | 89.61% | 10.39% |
| All Japonica | 496 | 77.42% | 22.58% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 27.96% | 72.04% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117322984 | C->T | LOC_Os11g30560(LOC_Os11g30560.1) | INTRON |