Detailed information of SNP:
|
SNP ID:
sf1117324332(Gbrowse)
Chromosome: chr11 Position: 17324332 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 90.82% | 9.18% |
| All Indica | 797 | 99.25% | 0.75% |
| All Japonica | 496 | 77.22% | 22.78% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 67 | 38.81% | 61.19% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117324332 | G->A | LOC_Os11g30560(LOC_Os11g30560.1) | INTRON |