Detailed information of SNP:
|
SNP ID:
sf1117332710(Gbrowse)
Chromosome: chr11 Position: 17332710 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 77.45% | 22.55% |
| All Indica | 799 | 85.61% | 14.39% |
| All Japonica | 497 | 75.86% | 24.14% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 54.46% | 45.54% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117332710 | A->T | INTERGENIC | None |