Detailed information of SNP:
|
SNP ID:
sf1117333812(Gbrowse)
Chromosome: chr11 Position: 17333812 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 93.21% | 6.79% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 481 | 81.08% | 18.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 80 | 42.50% | 57.50% |
| Japonica Intermediate | 66 | 39.39% | 60.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117333812 | G->A | INTERGENIC | None |