Detailed information of SNP:
|
SNP ID:
sf1117375223(Gbrowse)
Chromosome: chr11 Position: 17375223 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 64.19% | 35.81% |
| All Indica | 796 | 84.92% | 15.08% |
| All Japonica | 497 | 25.96% | 74.04% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 78.34% | 21.66% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117375223 | A->G | INTERGENIC | None |