Detailed information of SNP:
|
SNP ID:
sf1117379047(Gbrowse)
Chromosome: chr11 Position: 17379047 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 78.32% | 21.68% |
| All Indica | 798 | 81.20% | 18.80% |
| All Japonica | 497 | 75.86% | 24.14% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 47.42% | 52.58% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117379047 | A->T | LOC_Os11g30650(LOC_Os11g30650.1) | Non-Synonymous SNP |