Detailed information of SNP:
|
SNP ID:
sf1117412622(Gbrowse)
Chromosome: chr11 Position: 17412622 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 97.75% | 2.25% |
| All Indica | 797 | 96.24% | 3.76% |
| All Japonica | 456 | 99.78% | 0.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 93.30% | 6.70% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 297 | 99.66% | 0.34% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117412622 | G->A | INTERGENIC | None |