Detailed information of SNP:
|
SNP ID:
sf1117434600(Gbrowse)
Chromosome: chr11 Position: 17434600 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 88.76% | 11.24% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 493 | 78.09% | 21.91% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 90 | 26.67% | 73.33% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117434600 | G->A | INTERGENIC | None |