Detailed information of SNP:
|
SNP ID:
sf1117440978(Gbrowse)
Chromosome: chr11 Position: 17440978 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 63.50% | 36.50% |
| All Indica | 793 | 86.25% | 13.75% |
| All Japonica | 490 | 24.69% | 75.31% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 374 | 86.63% | 13.37% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 206 | 88.35% | 11.65% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 89 | 79.78% | 20.22% |
| Japonica Intermediate | 66 | 65.15% | 34.85% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117440978 | G->A | INTERGENIC | None |