Detailed information of SNP:
|
SNP ID:
sf1117441331(Gbrowse)
Chromosome: chr11 Position: 17441331 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 63.89% | 36.11% |
| All Indica | 798 | 86.97% | 13.03% |
| All Japonica | 497 | 24.75% | 75.25% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 212 | 85.38% | 14.62% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117441331 | A->G | INTERGENIC | None |