Detailed information of SNP:
|
SNP ID:
sf1117458217(Gbrowse)
Chromosome: chr11 Position: 17458217 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1333 | 53.86% | 46.14% |
| All Indica | 764 | 32.72% | 67.28% |
| All Japonica | 453 | 89.62% | 10.38% |
| Aus | 61 | 70.49% | 29.51% |
| Indica I | 357 | 36.69% | 63.31% |
| Indica II | 209 | 23.44% | 76.56% |
| Indica Intermediate | 198 | 35.35% | 64.65% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 71 | 69.01% | 30.99% |
| Japonica Intermediate | 49 | 59.18% | 40.82% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117458217 | A->G | INTERGENIC | None |