Detailed information of SNP:



SNP ID: sf1117487879(Gbrowse)

Chromosome: chr11

Position: 17487879
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 96.55% 3.45%
All Indica799 99.62% 0.38%
All Japonica497 91.75% 8.25%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 99.06% 0.94%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 97.01% 2.99%
Tropical Japonica94 69.15% 30.85%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 88.10% 11.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1117487879 G->A LOC_Os11g30840(LOC_Os11g30840.1) SNPs that introduce stop codons