Detailed information of SNP:
SNP ID:
sf1117487879(Gbrowse)
Chromosome: chr11 Position: 17487879 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1419 | 96.55% | 3.45% |
All Indica | 799 | 99.62% | 0.38% |
All Japonica | 497 | 91.75% | 8.25% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 99.06% | 0.94% |
Indica Intermediate | 211 | 99.53% | 0.47% |
Temperate Japonica | 335 | 97.01% | 2.99% |
Tropical Japonica | 94 | 69.15% | 30.85% |
Japonica Intermediate | 68 | 97.06% | 2.94% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1117487879 | G->A | LOC_Os11g30840(LOC_Os11g30840.1) | SNPs that introduce stop codons |