Detailed information of SNP:
|
SNP ID:
sf1117495160(Gbrowse)
Chromosome: chr11 Position: 17495160 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1313 | 53.77% | 46.23% |
| All Indica | 767 | 83.44% | 16.56% |
| All Japonica | 432 | 6.25% | 93.75% |
| Aus | 66 | 19.70% | 80.30% |
| Indica I | 356 | 82.02% | 17.98% |
| Indica II | 209 | 83.73% | 16.27% |
| Indica Intermediate | 202 | 85.64% | 14.36% |
| Temperate Japonica | 331 | 0.60% | 99.40% |
| Tropical Japonica | 67 | 25.37% | 74.63% |
| Japonica Intermediate | 34 | 23.53% | 76.47% |
| Group VI/Aromatic | 9 | 22.22% | 77.78% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117495160 | G->A | LOC_Os11g30850(LOC_Os11g30850.1) | Non-Synonymous SNP |