Detailed information of SNP:
|
SNP ID:
sf1117495557(Gbrowse)
Chromosome: chr11 Position: 17495557 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 96.54% | 3.46% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117495557 | C->T | LOC_Os11g30850(LOC_Os11g30850.1) | Non-Synonymous SNP |