Detailed information of SNP:
|
SNP ID:
sf1117497299(Gbrowse)
Chromosome: chr11 Position: 17497299 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 96.68% | 3.32% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 36.36% | 63.64% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117497299 | G->C | LOC_Os11g30860(LOC_Os11g30860.1) | Non-Synonymous SNP |