Detailed information of SNP:
|
SNP ID:
sf1117513470(Gbrowse)
Chromosome: chr11 Position: 17513470 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 65.03% | 34.97% |
| All Indica | 792 | 41.04% | 58.96% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 374 | 32.35% | 67.65% |
| Indica II | 208 | 42.79% | 57.21% |
| Indica Intermediate | 210 | 54.76% | 45.24% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117513470 | G->A | INTERGENIC | None |